
{"id":4214,"date":"2023-06-21T12:15:30","date_gmt":"2023-06-21T12:15:30","guid":{"rendered":"https:\/\/www.editage.com\/insights\/how-to-use-open-source-data-and-materials-in-your-research\/"},"modified":"2025-01-15T06:21:05","modified_gmt":"2025-01-15T06:21:05","slug":"how-to-use-open-source-data-and-materials-in-your-research","status":"publish","type":"post","link":"https:\/\/www.editage.com\/insights\/how-to-use-open-source-data-and-materials-in-your-research","title":{"rendered":"How to use open-source data and materials in your research"},"content":{"rendered":"<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">In the distant past, information was never subject to licensing or other restrictions. All across Eurasia, scribes would copy texts that they encountered, leading to great repositories of knowledge with often unknown providence. Still, only a lucky few were able to access this knowledge. <\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Despite later innovations, such as popularization of libraries, automated printing, and the Internet greatly improving access to knowledge, intellectual property laws mean that readers have often remained restricted in what they can do with information<sup><span lang=\"EN-GB\" style=\"line-height:107%\" xml:lang=\"EN-GB\">1<\/span><\/sup>.<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Open-source data and materials contain no or far fewer restrictions. Such materials are freely available for anyone to access, use, modify, and share at no cost. They can include datasets, software, hardware, publications, educational resources, and more. Here, we discuss how to intelligently use such information to improve the open science ecosystem.<\/span><\/span><\/span><\/p>\n<h1 style=\"margin:12pt 0cm 0cm\"><span style=\"font-size:16pt\"><span style=\"line-height:107%\"><span style=\"font-family:&quot;Calibri Light&quot;,sans-serif\"><span style=\"color:#2f5496\"><span style=\"font-weight:normal\">A brief history of open source<\/span><\/span><\/span><\/span><\/span><\/h1>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">The open-source movement appeared in the 1980s in response to the restrictive patents and copyright that constrained software distribution<sup><span lang=\"EN-GB\" style=\"line-height:107%\" xml:lang=\"EN-GB\">2<\/span><\/sup>. In response, the open-source movement introduced a novel idea\u2014applying licenses to data and software that ensure that users\u2019 liberty is not restricted. This now comes in two models:<i> copyleft<\/i> licensing, such as the GPL license, wherein information is shared so that anyone can use and share information without restriction provided that they apply the same license; and <i>permissive<\/i> licensing, such as the BSD license, which places no restrictions on users<sup><span lang=\"EN-GB\" style=\"line-height:107%\" xml:lang=\"EN-GB\">3<\/span><\/sup>.<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Since the monumental success of the free and open software movement, open licensing is now being applied to other types of data, such as scientific datasets, picture files, text publications, and even hardware.<\/span><\/span><\/span><\/p>\n<h1 style=\"margin:12pt 0cm 0cm\"><span style=\"font-size:16pt\"><span style=\"line-height:107%\"><span style=\"font-family:&quot;Calibri Light&quot;,sans-serif\"><span style=\"color:#2f5496\"><span style=\"font-weight:normal\">Open source in scientific research<\/span><\/span><\/span><\/span><\/span><\/h1>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Open-source data is growing due to the many benefits it confers to researchers, particularly to early-career researchers<sup><span lang=\"EN-GB\" style=\"line-height:107%\" xml:lang=\"EN-GB\">4<\/span><\/sup>. First, it facilitates collaboration and in particular interdisciplinary research. Making data open also increases transparency, which can aid the reproducibility and reliability of research, as well as aiding reach. Finally, it can also lower the costs and barriers of conducting research. A researcher in a university in the Global South is far less likely to have access to cutting-edge equipment like a next-generation sequencer, but if they have access to open-source data, they can perform useful bioinformatic analyses despite having fewer resources.<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">However, using open-source information comes with challenges and pitfalls, including difficulties with finding relevant and high-quality sources, questions regarding the validity and reliability of these data and materials, and ethical principles and practices that must be maintained.<\/span><\/span><\/span><\/p>\n<h1 style=\"margin:12pt 0cm 0cm\"><span style=\"font-size:16pt\"><span style=\"line-height:107%\"><span style=\"font-family:&quot;Calibri Light&quot;,sans-serif\"><span style=\"color:#2f5496\"><span style=\"font-weight:normal\">Finding relevant sources<\/span><\/span><\/span><\/span><\/span><\/h1>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Before using open-source data and materials, one must, of course, find sources that are relevant to your research topic and methods. To facilitate the sharing of such data, researchers have developed many platforms and repositories that host open-source information for many disciplines. Some examples are:<\/span><\/span><\/span><\/p>\n<ul>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\"><a href=\"https:\/\/zenodo.org\/\" style=\"color:#0563c1; text-decoration:underline\">Zenodo<\/a>: A general-purpose repository operated by CERN that allows researchers to upload and share any type of research output, such as datasets, software, publications, or posters.<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\"><a href=\"https:\/\/github.com\/\" style=\"color:#0563c1; text-decoration:underline\">GitHub<\/a>: A platform that hosts open-source software projects and allows developers to collaborate on code, documentation, and issues. It also includes version control features.<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\"><a href=\"https:\/\/osf.io\/\" style=\"color:#0563c1; text-decoration:underline\">Open Science Framework<\/a>: A platform and management tool that supports the entire research lifecycle, from project management to data sharing and archiving.<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\"><a href=\"https:\/\/figshare.com\/\" style=\"color:#0563c1; text-decoration:underline\">Figshare<\/a>: A repository that allows researchers to upload and share any type of research output, such as datasets, software, publications, or media files.<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\"><a href=\"https:\/\/datadryad.org\/stash\" style=\"color:#0563c1; text-decoration:underline\">Dryad<\/a>: A repository that curates and preserves data associated with peer-reviewed publications in the natural sciences.<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\"><a href=\"https:\/\/www.kaggle.com\/\" style=\"color:#0563c1; text-decoration:underline\">Kaggle<\/a>: A platform that hosts datasets and competitions for data science and machine learning.<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\"><a href=\"https:\/\/explore.openaire.eu\/\" style=\"color:#0563c1; text-decoration:underline\">OpenAIRE<\/a>: A network that aggregates open access publications and data from various sources across Europe.<\/span><\/span><\/span><\/li>\n<\/ul>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">These are just a few examples of open-source repositories that you can explore for your research. Search engines such as <a href=\"https:\/\/datasetsearch.research.google.com\/\" style=\"color:#0563c1; text-decoration:underline\">Google Dataset Search<\/a> or <a href=\"https:\/\/datacite.org\/\" style=\"color:#0563c1; text-decoration:underline\">DataCite <\/a>can also help you find open-source data from various sources.<\/span><\/span><\/span><\/p>\n<h1 style=\"margin:12pt 0cm 0cm\"><span style=\"font-size:16pt\"><span style=\"line-height:107%\"><span style=\"font-family:&quot;Calibri Light&quot;,sans-serif\"><span style=\"color:#2f5496\"><span style=\"font-weight:normal\">Assessing the quality and reliability<\/span><\/span><\/span><\/span><\/span><\/h1>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Learning to assess the credibility and reliability of information is vital to any researcher. Likewise, after finding potential sources of open-source data and materials for your research, you should assess them thoroughly. Some criteria and key questions that you can use to evaluate open-source data and materials are:<\/span><\/span><\/span><\/p>\n<ul>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Provenance: Who created or contributed to the data or material? What is their expertise and reputation? How can you contact them for more information or clarification?<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Documentation: How well are the data or materials documented? Do they include clear and comprehensive information on its origin, purpose, methods, format, structure, and variables?<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Metadata: How well are the data or material described by metadata? Do they follow any standards or schemas? <\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">License: What are the terms and conditions of using the data or material? Do they have a clear and explicit license? Do they allow you to access, use, modify, and share the data or material without any restrictions or fees?<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Quality: How accurate, consistent, and relevant, are the data or materials? Do they meet your research needs and expectations? Does the data set have any errors or limitations?<\/span><\/span><\/span><\/li>\n<li style=\"margin: 0cm 0cm 8pt;\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Format: How easy is it to access, use, manipulate, or analyze the data or material? Is it in a standard or compatible format? Does it require any special software or tools?<\/span><\/span><\/span><\/li>\n<\/ul>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Once the answers to these questions become clear, you can select data that are most suitable for your research.<\/span><\/span><\/span><\/p>\n<h1 style=\"margin:12pt 0cm 0cm\"><span style=\"font-size:16pt\"><span style=\"line-height:107%\"><span style=\"font-family:&quot;Calibri Light&quot;,sans-serif\"><span style=\"color:#2f5496\"><span style=\"font-weight:normal\">Adhering to ethical principles and practices<\/span><\/span><\/span><\/span><\/span><\/h1>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">It\u2019s vital to adhere to the ethical concepts that respect the rights and interests of the creators or contributors of the data or material, as well as those of your research community. <\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">First, the intellectual property rights of the creators or contributors of the data or material should be respected, with appropriate acknowledgement of their contributions. You should also comply with the license terms and conditions of the data or material and avoid any license violations<sup><span lang=\"EN-GB\" style=\"line-height:107%\" xml:lang=\"EN-GB\">5<\/span><\/sup>.<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Next, the data or material that you use in your research should be cited according to the citation guidelines provided by the source or publication. You should also provide a link to the data or material and indicate any modifications that you have made to it.<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Finally, open-source data should be used in the same responsible and rigorous manner as data that you have generated yourself. This includes avoiding any errors, biases, or misinterpretations that may compromise the validity and reliability of your research. As with any data, you should also report any limitations or uncertainties that may affect your research results and conclusions<sup><span lang=\"EN-GB\" style=\"line-height:107%\" xml:lang=\"EN-GB\">6<\/span><\/sup>.<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">By following these ethical principles and practices, you can use open-source data and materials in a way that is respectful, responsible, and beneficial both for your research and for the research community.<\/span><\/span><\/span><\/p>\n<h1 style=\"margin:12pt 0cm 0cm\"><span style=\"font-size:16pt\"><span style=\"line-height:107%\"><span style=\"font-family:&quot;Calibri Light&quot;,sans-serif\"><span style=\"color:#2f5496\"><span style=\"font-weight:normal\">Conclusion<\/span><\/span><\/span><\/span><\/span><\/h1>\n<p style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">Open-source data and materials can be a great boon to researchers if they are used intelligently. Being a responsible steward of open-source information can benefit not only individual researchers, but their whole academic community. Releasing your information in an open-source repository is also a crucial way that you can contribute to your field and maximize the impact of your research, which can even boost your career<sup><span lang=\"EN-GB\" style=\"line-height:107%\" xml:lang=\"EN-GB\">7<\/span><\/sup>.<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\">\u00a0<\/p>\n<p style=\"margin:0cm 0cm 8pt\"><i>Would you like a 1:1 consultation with an expert statistician? Check out Editage\u2019s\u00a0<\/i><a href=\"https:\/\/www.editage.com\/services\/publishing-services-packs\/statistical-analysis\"><i>Statistical Analysis &amp; Review Service<\/i><\/a>.<\/p>\n<h1 style=\"margin:12pt 0cm 0cm\"><span style=\"font-size:16pt\"><span style=\"line-height:107%\"><span style=\"font-family:&quot;Calibri Light&quot;,sans-serif\"><span style=\"color:#2f5496\"><span style=\"font-weight:normal\">References<\/span><\/span><\/span><\/span><\/span><\/h1>\n<p class=\"MsoBibliography\" style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">1.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Keeping science open: the effects of intellectual property policy on the conduct of science | Royal Society. https:\/\/royalsociety.org\/topics-policy\/publications\/2003\/keeping-science-open\/.<\/span><\/span><\/span><\/p>\n<p class=\"MsoBibliography\" style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">2.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 FSF History. https:\/\/www.fsf.org\/history\/.<\/span><\/span><\/span><\/p>\n<p class=\"MsoBibliography\" style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">3.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Salter, J. Open source licenses: What, which, and why. <i>Ars Technica<\/i> https:\/\/arstechnica.com\/gadgets\/2020\/02\/how-to-choose-an-open-source-license\/ (2020).<\/span><\/span><\/span><\/p>\n<p class=\"MsoBibliography\" style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">4.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Allen, C. &amp; Mehler, D. M. A. Open science challenges, benefits and tips in early career and beyond. <i>PLOS Biol.<\/i> <b>17<\/b>, e3000246 (2019).<\/span><\/span><\/span><\/p>\n<p class=\"MsoBibliography\" style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">5.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Understanding and Complying with Open Source Software Licenses &#8211; Why, When and How. <i>Lexology<\/i> https:\/\/www.lexology.com\/library\/detail.aspx?g=b84017e3-013b-4808-bd39-fa5c3211cf03 (2021).<\/span><\/span><\/span><\/p>\n<p class=\"MsoBibliography\" style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">6.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Labaree, R. V. Research Guides: Organizing Your Social Sciences Research Paper: Limitations of the Study. https:\/\/libguides.usc.edu\/writingguide\/limitations.<\/span><\/span><\/span><\/p>\n<p class=\"MsoBibliography\" style=\"margin:0cm 0cm 8pt\"><span style=\"font-size:11pt\"><span style=\"line-height:107%\"><span style=\"font-family:Calibri,sans-serif\">7.\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0 Popkin, G. Data sharing and how it can benefit your scientific career. <i>Nature<\/i> <b>569<\/b>, 445\u2013447 (2019).<\/span><\/span><\/span><\/p>\n<p style=\"margin:0cm 0cm 8pt\">\u00a0<\/p>\n","protected":false},"excerpt":{"rendered":"<p>In the distant past, information was never subject to licensing or other restrictions. All across Eurasia, scribes would copy texts that they encountered, leading to great repositories of knowledge with often unknown providence. Still, only a lucky few were able to access this knowledge. Despite later innovations, such as popularization of libraries, automated printing, and [&hellip;]<\/p>\n","protected":false},"author":2681,"featured_media":33313,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"inline_featured_image":false,"footnotes":""},"categories":[2420,2415],"tags":[2622],"new_categories":[],"new_tags":[],"series":[],"class_list":["post-4214","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-data-analysis","category-data-storage-management","tag-analysisofdata"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.0 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>How to use open-source data and materials in your research | Editage Insights<\/title>\n<meta name=\"description\" content=\"This article discusses how to intelligently use datasets, software, hardware, publications, and\u00a0 educational 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